For Minecraft 1.9 and higher, additional mod support was moved back to the main mod.
This mod adds Crafting Tweaks support to a bunch of mods that are either closed-source, unmaintained or haven't gotten around to adding support on their side.
Supported Mods:
EzStorage
Thaumcraft 5
Progressive Automation
Storage Silo
Feel free to request support for further mods adding crafting grids.
